PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009609582.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 108aa    MW: 12396 Da    PI: 10.5128
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009609582.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY35.42.1e-1187108122
                     ---SS-EEEEEEE--TT-SS-E CS
            WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                     ldDgy+WrKYGqK vk++++pr
  XP_009609582.1  87 LDDGYRWRKYGQKAVKNNNYPR 108
                     59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-1372108IPR003657WRKY domain
SuperFamilySSF1182905.49E-1079108IPR003657WRKY domain
PROSITE profilePS5081113.76982108IPR003657WRKY domain
PfamPF031062.4E-788108IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MENQWMPFLG STCCYNSMNG WISGLKTENS NSTAREQHVS NIKHSPVGVV SSETHTTNII  60
SSLKKKGDKK IKKPRFAFQT RSQVDILDDG YRWRKYGQKA VKNNNYPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754414e-43HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755144e-43HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630533.12e-76PREDICTED: probable WRKY transcription factor 43
RefseqXP_016444143.12e-76PREDICTED: probable WRKY transcription factor 43
TrEMBLA0A1S3XW284e-75A0A1S3XW28_TOBAC; probable WRKY transcription factor 43
STRINGXP_009609582.11e-76(Nicotiana tomentosiformis)
STRINGXP_009630533.17e-76(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22042461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.13e-19WRKY DNA-binding protein 75