PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009609677.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 147aa    MW: 16514.9 Da    PI: 9.9076
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009609677.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY24.65.1e-08128147120
                     ---SS-EEEEEEE--TT-SS CS
            WRKY   1 ldDgynWrKYGqKevkgsef 20 
                     +dDg+ WrKYGqK++ +s++
  XP_009609677.1 128 VDDGHVWRKYGQKQILDSPY 147
                     59*************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-7113147IPR003657WRKY domain
PROSITE profilePS508119.19123147IPR003657WRKY domain
SuperFamilySSF1182902.09E-6124147IPR003657WRKY domain
PfamPF031068.9E-5129146IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MDSQWPENSL ADLKMLIKEL NCGQEFTHKL REVIKKPLGN GYTNIFAENL VGKIMSSFCK  60
TLSILNSSNS NENSPIPVVA VFPCRKDGRM SPEDSTGSCK KSSSKDRRGC NKKRKISVKS  120
IKETSTLVDD GHVWRKYGQK QILDSPY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609677.21e-105PREDICTED: probable WRKY transcription factor 70, partial
RefseqXP_016448472.11e-103PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A1S3Y8U01e-102A0A1S3Y8U0_TOBAC; probable WRKY transcription factor 70
STRINGXP_009609677.11e-105(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42302143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.15e-12WRKY DNA-binding protein 70