PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009609853.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 330aa MW: 36681.6 Da PI: 9.545

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009609853.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.6	1.5e-15	224	305	1	79
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 f+kvl+ sd+++ grlvlpk +ae++ +++ e+ ++++d +g++W++++++ +++s++yvl+ G + +L++gD+ XP_009609853.1 224 FEKVLSASDAGRIGRLVLPKACAEAYfpPINQSEGLPIRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDT 305 99************************666667778***********99899999999.**************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.3E-24	220	305	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.93E-17	221	305	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.75E-20	222	305	No hit	No description
Pfam	PF02362	6.8E-13	224	305	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.305	224	327	IPR003340	B3 DNA binding domain
SMART	SM01019	4.5E-13	224	318	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MLWQIPGDDL PNGTLGTKAT QPLGVENKMD ENSFDKRRVM RLSKPVETSE SGQLFQTQKN 60 DIKQETMLPI GNVSTCFSNL NQQPVGTASL FGKPDNDRQS QGVKDMYELI NQPSLNFSLS 120 TLVGASSSAQ PFPGGDVEGR EQSKSSPFQL GQRTRHILPK PPKPSPNSGS ESNKAMASQT 180 RVARPPAEGR GGRNQLLPRY WPRITDQELQ QISGDLKSTI VPLFEKVLSA SDAGRIGRLV 240 LPKACAEAYF PPINQSEGLP IRIQDIKGKE WTFQFRFWPN NNSRMYVLEG VTPCIQNMQL 300 QAGDTGNSSF FLLMKKKQKE ISSYDQPCLY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5yzy_C	3e-60	202	305	1	104	B3 domain-containing transcription repressor VAL1
5yzz_C	3e-60	202	305	1	104	B3 domain-containing transcription repressor VAL1
5z00_C	3e-60	202	305	1	104	B3 domain-containing transcription repressor VAL1
5z00_G	3e-60	202	305	1	104	B3 domain-containing transcription repressor VAL1
5z00_K	3e-60	202	305	1	104	B3 domain-containing transcription repressor VAL1
5z00_M	3e-60	202	305	1	104	B3 domain-containing transcription repressor VAL1
6j9a_A	2e-60	202	305	2	105	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009609853.1	0.0	PREDICTED: B3 domain-containing protein Os07g0679700-like
Swissprot	Q6Z3U3	8e-81	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A1S3YDA2	0.0	A0A1S3YDA2_TOBAC; LOW QUALITY PROTEIN: B3 domain-containing transcription repressor VAL1-like
STRING	XP_009609853.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1491	23	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	2e-74	HSI2-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]