PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009610112.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 808aa    MW: 90280.2 Da    PI: 5.7935
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009610112.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP115.13.7e-36159236178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cqv++Cead+se+k yh+rh+vC  +++a++v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k++
  XP_009610112.1 159 RCQVPDCEADISELKGYHKRHRVCLRCANATAVFLDGQSKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKAT 236
                     6*************************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.5E-27155221IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.291157234IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.23E-33158239IPR004333Transcription factor, SBP-box
PfamPF031101.1E-26160234IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 808 aa     Download sequence    Send to blast
MHNNQASSPS QTGAPTQFRN TQMMLSGTLD DPAVSSSLFD WSDFLEFNLD EEQLNISFDD  60
PLFHPPETET EPAAPLIIPS SEDSPQSQEA DADADADADA GRVRKRDPRM ACSNFLAGRI  120
PCACPELDEK MEEEELGGIG PGKKRARTLR ASSRAAGARC QVPDCEADIS ELKGYHKRHR  180
VCLRCANATA VFLDGQSKRY CQQCGKFHIL SDFDEGKRSC RRKLERHNNR RRRKATDSLK  240
MSVEKESRQV TTADDISGDD DNVKDSTCTG SQLGEREILL ESEGHVPIGS TQGIQNNQSD  300
SFTASGETQV DAEKENSKNS LSPSYYDNKS AFSSMCPTGR ISFKLYDWNP AEFPRRLRHQ  360
IFQWLASMPV ELEGYIRPGC TILTVFVAMP TFKWGKLLED PAAHLYEFIA SPGNMLRGRG  420
SFLVYLNNMV FRVTKGENSV VKVKLKGPAP KLKSIHPTCF EAGKPMEFFA CGSNLMQPRF  480
RFLVSFGGRY LGNDISVTPS CSKNEGGSGS MEHQLLKIHV PRTEADLFGP AFVEVENESG  540
LSNFIPILIA EKDICVEMKE IQRKFCSGGS EHTAVCSPCE DSTCTKSEFS EFMLDVAWLL  600
REPSSENVQI VASVQMQRFN YLLNVLMESQ STIILKRVLP YFENMVNRNL LAGITDAEMR  660
LFQRNIYEKN NLLKERLQLK EYCAGDAGQI MQEANTSSEI FQNHMKSVFP VNNEDVEVPH  720
EHNLEFGSAY WESTSTVPLL DAELALRVKE QSGKPCGFLV RKTVLTSRTL VFVITGFAVC  780
LGLCATFLHP GKVGEFAMTI RRCLFDNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A1e-44158237483squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220232RRKLERHNNRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC0732960.0LC073296.1 Nicotiana tabacum NtabSPL7 mRNA for squamosa promoter binding protein NtabSPL7, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009610112.10.0PREDICTED: squamosa promoter-binding-like protein 7
TrEMBLA0A125SZN50.0A0A125SZN5_TOBAC; Squamosa promoter binding protein NtabSPL7
STRINGXP_009610112.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54072433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.20.0squamosa promoter binding protein-like 7