PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009610259.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 239aa    MW: 27241.5 Da    PI: 8.3376
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009610259.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.62.7e-12107148351
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                      +GV++  k+ +W A I++      +k+++lg+ gt eeAa+++++a+ 
  XP_009610259.1 107 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAARLYDRAAF 148
                     79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-6106149IPR001471AP2/ERF domain
SMARTSM003807.6E-5106163IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-8107151IPR016177DNA-binding domain
CDDcd000182.28E-11108159No hitNo description
Gene3DG3DSA:3.30.730.107.9E-7109152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MVSIRRRKLL GLCSGRSSFL VPLPKFSENG HIAENCFLNN KSTSVHPMPS TDIDESKEKT  60
AVKVVPGSSK GHASGSLIEQ TAQQFPEVKR RKRHRRKHFE NQEPCLMRGV YFKNMKWQAA  120
IKVDKKQIHL GTVGTQEEAA RLYDRAAFMC GREPNFEISE EEKQELRQFK WDEFLAFTRS  180
AITNKKTRRR SGAGSRRKSE PLTSTPNSEE EEEEEEEGGE PESNGFSASE DIEQDISFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2540666e-87AC254066.8 Solanum lycopersicum strain Heinz 1706 chromosome 9 clone sle-10p22 map 9, complete sequence.
GenBankHG9754486e-87HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755216e-87HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009610259.11e-178PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2
RefseqXP_016497817.11e-178PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2
TrEMBLA0A1S4C9991e-176A0A1S4C999_TOBAC; ethylene-responsive transcription factor-like protein At4g13040 isoform X2
STRINGXP_009758059.11e-144(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.11e-45ERF family protein