PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009610416.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 226aa    MW: 25699.8 Da    PI: 10.3886
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009610416.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM89.94.4e-28201591128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk....sgyWkatgkdk 90 
                     lp GfrF+Ptdeel+ +yL +k+ + +l++  +i+e+ di+++ P+dLp+     +++ yfFsk++   ++ k  +r ++    sgyWka g+ +
  XP_009610416.1  20 LPIGFRFRPTDEELLAHYLSRKIFSMPLPA-LIIPEIlDIFDSFPSDLPA--GDLREKRYFFSKANGDINS-KGCSRLISgkdcSGYWKAVGQGQ 110
                     699**************************9.5688888***********3..3345678****99987754.4445532224569********** PP

             NAM  91 evlsk.........kgel....vglkktLvfykgrapkgektdWvmheyrl 128
                      +++          +  +     g+kk L fy+++++    t+W+mh+y+l
  XP_009610416.1 111 LIVVPisgsaisdqQ--QqrllLGMKKALRFYQATRSGYLTTRWIMHQYSL 159
                     **9998888887541..14667**********99999999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-3315185IPR003441NAC domain
PROSITE profilePS5100534.10820185IPR003441NAC domain
PfamPF023652.3E-1921159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MEEQKDGAKR GGGTVRSLNL PIGFRFRPTD EELLAHYLSR KIFSMPLPAL IIPEILDIFD  60
SFPSDLPAGD LREKRYFFSK ANGDINSKGC SRLISGKDCS GYWKAVGQGQ LIVVPISGSA  120
ISDQQQQRLL LGMKKALRFY QATRSGYLTT RWIMHQYSLV TISPSDQNVN MMQVGDWSIF  180
RIYQKKLLIS KNVRTKSNGF AEQCKIKTNT RKRPFNEVLK DKEVLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-2171862169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009610416.11e-168PREDICTED: NAC domain-containing protein 83-like isoform X1
TrEMBLA0A1S4AB021e-165A0A1S4AB02_TOBAC; NAC domain-containing protein 83-like isoform X1
STRINGXP_009610416.11e-167(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132501318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.15e-30NAC domain containing protein 41