PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009610419.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 228aa MW: 25629.3 Da PI: 7.1149

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009610419.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00052	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C++ F ++ L H++ H XP_009610419.1 56 FSCLYCSRKFCTSQALGGHQNAH 78 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.44E-5	53	83	No hit	No description
PROSITE profile	PS50157	10.97	56	83	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	58	78	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MADPSLVYDF WNQQHSNSTE MVLLSDINVA SPLNQQQQPI PIPKPNKPKV QTSRTFSCLY 60 CSRKFCTSQA LGGHQNAHKR ERAASRRTMF PVTSTDSDTR NMVHFHFLQN NNNNNDDKQG 120 LEPSLNNYPL MTGQMLPEHN INHTTTTTYS NPYANYFSGQ LQTPASNNIN VFNPFSSSDV 180 YHPPPLPTLG FGGHHVYFTS GDATLSTAQD LSSMDNNHQL NLDLTLRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009610419.1	1e-169	PREDICTED: uncharacterized protein LOC104104117
TrEMBL	A0A1S4AAU9	1e-145	A0A1S4AAU9_TOBAC; uncharacterized protein LOC107795628
STRING	XP_009610419.1	1e-169	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9238	17	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14010.1	1e-14	C2H2 family protein