PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009610476.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 161aa MW: 18518.3 Da PI: 8.6807

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009610476.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	29.6	8.8e-10	14	50	6	42
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +s+++ + kR + + K Ae LS+LCd+ev +ii+ s XP_009610476.1 14 DSKKKAILDKRIASLCKRAEKLSILCDIEVGLIIYNS 50 566667788*************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	11.928	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	0.0086	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.41E-12	13	94	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.5E-8	14	50	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MTRKGLRNIK NLSDSKKKAI LDKRIASLCK RAEKLSILCD IEVGLIIYNS PVETNPFVWP 60 SLTKATNIVT NYLRFTEVQR EKKLVRHDVY LQEKVNDMEK NVRSKIEQMA EEMEMETLFN 120 QLVKGKNINE LDVRQIKGLG ESEGKANDDG EKNDGHPKDL D

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019248919.1	2e-42	PREDICTED: agamous-like MADS-box protein AGL15
TrEMBL	A0A1J6IMU5	4e-41	A0A1J6IMU5_NICAT; Agamous-like mads-box protein agl36
STRING	XP_009610476.1	1e-114	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA378	20	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05860.2	2e-20	M-type_MADS family protein