PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009611728.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 206aa MW: 22567.9 Da PI: 5.0026

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009611728.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.7	2e-43	56	155	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpee+r da++s+vyeA+ar+rdPvyG++gvi +lq+q+++l+ae a XP_009611728.1 56 PCAACKILRRRCVDKCVLAPYFPPTDPLKFTIAHRVFGASNIIKMLQELPEEQRADAVNSMVYEANARIRDPVYGCAGVICQLQKQISELQAEFA 150 7********************************************************************************************** PP DUF260 96 llkee 100 + ++e XP_009611728.1 151 KSQAE 155 99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.445	55	156	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.1E-43	56	153	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MECSDNKTTT ISSLIASSKN SPNIVSATTT SSGLLSPKSI LSAPPFSPPP PVILTPCAAC 60 KILRRRCVDK CVLAPYFPPT DPLKFTIAHR VFGASNIIKM LQELPEEQRA DAVNSMVYEA 120 NARIRDPVYG CAGVICQLQK QISELQAEFA KSQAEILNLK CQNSNLLALV CMEVSEFQEI 180 SSNEYGNTSL FLEDNSVYAA WETLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-43	47	161	2	116	LOB family transfactor Ramosa2.1
5ly0_B	8e-43	47	161	2	116	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975517	1e-62	HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009611728.1	1e-151	PREDICTED: LOB domain-containing protein 1-like
Refseq	XP_016497689.1	1e-151	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	8e-71	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A1S4C9Q3	1e-149	A0A1S4C9Q3_TOBAC; LOB domain-containing protein 1-like
STRING	XP_009611728.1	1e-150	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	1e-73	LOB domain-containing protein 1