PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009611998.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

YABBY

Protein Properties

Length: 191aa MW: 21244.1 Da PI: 8.4939

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009611998.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	234.9	1.8e-72	9	165	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 sse+vCyv+CnfCnt+lavsvP +s++++vtvrCGhC++llsvn+ q l+ ++ +++ + ++ e+ s+ ++s++++++ + XP_009611998.1 9 PSSERVCYVHCNFCNTMLAVSVPCNSMMTIVTVRCGHCANLLSVNIGSLLQSLPLQDLQQQRQQSSIIEDA--------SKACGSSSSTNYHRFS 95 689*************************************************99953333333333332........2334445555666666 PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + +++ pr+ p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl XP_009611998.1 96 AIATTPEDDQPRTMP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 165 667777778888888.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.3E-75	10	165	IPR006780	YABBY protein
SuperFamily	SSF47095	3.67E-9	104	158	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.6E-5	113	159	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MSLDITYSPS SERVCYVHCN FCNTMLAVSV PCNSMMTIVT VRCGHCANLL SVNIGSLLQS 60 LPLQDLQQQR QQSSIIEDAS KACGSSSSTN YHRFSAIATT PEDDQPRTMP IRPPEKRQRV 120 PSAYNRFIKE EIQRIKASNP DISHREAFST AAKNWAHFPH IHFGLKLEGN KQAKLDHAVA 180 GEGPQKSIGL Y

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009611998.1	1e-143	PREDICTED: putative axial regulator YABBY 2 isoform X2
Swissprot	Q9XFB0	3e-76	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A1J6KYN5	1e-131	A0A1J6KYN5_NICAT; Putative axial regulator yabby 2
STRING	XP_009611997.1	1e-132	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	1e-71	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]