PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009611999.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

YABBY

Protein Properties

Length: 190aa MW: 21116 Da PI: 8.4939

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009611999.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	234.4	2.6e-72	9	164	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 sse+vCyv+CnfCnt+lavsvP +s++++vtvrCGhC++llsvn+ q l+ ++ l+++ + ++ e+ ++ ++s++++++ + XP_009611999.1 9 PSSERVCYVHCNFCNTMLAVSVPCNSMMTIVTVRCGHCANLLSVNIGSLLQSLPLQD-LQQRQQSSIIEDASKA--------CGSSSSTNYHRFS 94 689*************************************************999.5666666665554433........3344444555555 PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + +++ pr+ p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl XP_009611999.1 95 AIATTPEDDQPRTMP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 164 555666677777777.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.8E-74	10	164	IPR006780	YABBY protein
SuperFamily	SSF47095	3.67E-9	103	157	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.6E-5	112	158	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MSLDITYSPS SERVCYVHCN FCNTMLAVSV PCNSMMTIVT VRCGHCANLL SVNIGSLLQS 60 LPLQDLQQRQ QSSIIEDASK ACGSSSSTNY HRFSAIATTP EDDQPRTMPI RPPEKRQRVP 120 SAYNRFIKEE IQRIKASNPD ISHREAFSTA AKNWAHFPHI HFGLKLEGNK QAKLDHAVAG 180 EGPQKSIGLY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009611999.1	1e-142	PREDICTED: putative axial regulator YABBY 2 isoform X3
Swissprot	Q9XFB0	2e-75	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A1J6KYN5	1e-131	A0A1J6KYN5_NICAT; Putative axial regulator yabby 2
STRING	XP_009611997.1	1e-132	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	2e-72	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]