PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009612340.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 183aa    MW: 20917.9 Da    PI: 10.3813
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009612340.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.29.3e-181655241
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                    +i+n+ nrqvtfskRrng++KKA+EL v+++ae  +i+  
  XP_009612340.1 16 KIKNQNNRQVTFSKRRNGVFKKANELAVMTGAEGGIIVCP 55
                    79*******************************9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.9E-20766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.339767IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-14929IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.24E-21979IPR002100Transcription factor, MADS-box
PfamPF003197.5E-191663IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-142944IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-144465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MSTRRIKVRK SVRLAKIKNQ NNRQVTFSKR RNGVFKKANE LAVMTGAEGG IIVCPQGSKP  60
YSFGHPNVNE TINKYVGEER PPSPSDIDDK YAQMFRKANS RELNIRLSSL QDQLDFALKL  120
KSKLKEMNKN VESQQEWFKG PIEKMNYTEA SMLKGGLEDL LLKVKNYGAE HGYGYENGKW  180
KAE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009612340.11e-134PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1S4D0071e-132A0A1S4D007_TOBAC; agamous-like MADS-box protein AGL62
STRINGXP_009612340.11e-134(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3829435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-28AGAMOUS-like 62