PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009612707.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 163aa MW: 18698.5 Da PI: 10.2193

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009612707.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	60.3	2.3e-19	16	54	2	40
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 +ien+ nrqvtfskRrng++KKA+EL v+++aev +i+ XP_009612707.1 16 KIENQNNRQVTFSKRRNGVFKKANELVVMTGAEVGIIVC 54 79***********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	19.708	7	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.5E-20	7	65	IPR002100	Transcription factor, MADS-box
CDD	cd00120	2.52E-20	9	65	No hit	No description
SuperFamily	SSF55455	1.29E-17	9	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-12	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.4E-19	16	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-12	29	44	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MSTGHIKVRK SVRLAKIENQ NNRQVTFSKR RNGVFKKANE LVVMTGAEVG IIVCPQERPP 60 SPSSPGIDDK YVQMFRKANS SELNTQLNSL QDQLDFALHL KRKLKQMNKK VEGQQEWFKG 120 PIEKMNYIEA SMLKEGLEDL LLKVKNYGTE HGYGYENGKW KAE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	105	LKRKLKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009612707.1	1e-119	PREDICTED: agamous-like MADS-box protein AGL61
TrEMBL	A0A1S4A1V1	1e-111	A0A1S4A1V1_TOBAC; agamous-like MADS-box protein AGL61
STRING	XP_009612707.1	1e-118	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3829	4	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	2e-20	AGAMOUS-like 61