PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009612760.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 338aa    MW: 38651.3 Da    PI: 10.1378
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009612760.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.76.9e-16125214198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f k ++ps+v    +l lpk+f++ h   +  ++t++l de+ ++++  +  ++++    l++GW++F  +++L  gD ++F+l++  +  l+v 
  XP_009612760.1 125 FAKCMLPSNVAHGFWLHLPKSFCNMHL--PSHDTTVILVDEWDNEYKTSYLLERNG----LSAGWRGFSMSHRLLKGDLLIFRLIEPCK--LKVY 211
                     889********************8884..345679***************888888....***********************997444..5888 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  XP_009612760.1 212 IIR 214
                     877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-18117216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-22119216IPR015300DNA-binding pseudobarrel domain
CDDcd100173.23E-21123214No hitNo description
PROSITE profilePS5086311.434125216IPR003340B3 DNA binding domain
PfamPF023621.5E-12125214IPR003340B3 DNA binding domain
SMARTSM010191.0E-17125216IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEDRNLISVK PVTKRWKEGQ QKVGHHKLKP TSYSSASTST QTHPSPKIKR VQLDRKNMVP  60
KKPRSVKSKA KRVKSNHPRK AESKLKGTNK RTRINDLYDD VEAKFSVMER AERILSSLAD  120
EFPSFAKCML PSNVAHGFWL HLPKSFCNMH LPSHDTTVIL VDEWDNEYKT SYLLERNGLS  180
AGWRGFSMSH RLLKGDLLIF RLIEPCKLKV YIIRVNGRDV VDAALCLMNF DALKKSTDLD  240
LAQKDNRKRK KAKRLVEPFY VDFSKPKEYI QNDSHSAVDL NVSPSVHRSE TNSEVLDSEV  300
PEGFIAGSDV INRLQSNEIC CSETSFLHDN PQKSISCR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246250RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-79HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755131e-79HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009612760.10.0PREDICTED: B3 domain-containing protein At5g42700-like isoform X2
TrEMBLA0A1S4DQN70.0A0A1S4DQN7_TOBAC; B3 domain-containing protein At5g42700-like isoform X2
STRINGXP_009612758.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.16e-38B3 family protein