PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009612871.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 254aa MW: 28757.3 Da PI: 4.7547

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009612871.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.8	4.2e-39	10	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rrkC+++Cvlapyfp++qpk f+n+h+lFG+ n++k+lk+l++++ + dam+s+++eA+++ r PvyG+v+ i +l+qql+ + +el XP_009612871.1 10 ACAACKYQRRKCSSECVLAPYFPSNQPKMFQNAHRLFGVCNIMKILKQLDDDDqKADAMKSIIFEADMWERFPVYGCVEYIYHLRQQLQFALEEL 104 7**********************************************655549************************************** PP DUF260 95 allkee 100 +++ ++ XP_009612871.1 105 HYVYAQ 110 998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.537	9	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-37	10	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MTVKGGTSPA CAACKYQRRK CSSECVLAPY FPSNQPKMFQ NAHRLFGVCN IMKILKQLDD 60 DDQKADAMKS IIFEADMWER FPVYGCVEYI YHLRQQLQFA LEELHYVYAQ LALYREQQQQ 120 QLALECGVTS EIPFVNGLSV GPFFTSEGGP KTNLMGSDSI FDHNNSIAFP ASDHAIFGFG 180 VRDDQRDISH EYECLINPFN NIMADDRQSY VETKEACDSS SESSWKDTQS LENLSQNELR 240 NAAACFSLTS RVTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-24	2	114	4	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-24	2	114	4	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009612871.1	0.0	PREDICTED: LOB domain-containing protein 11-like
TrEMBL	A0A1S3X592	0.0	A0A1S3X592_TOBAC; LOB domain-containing protein 2-like
STRING	XP_009612871.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1449	23	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	8e-29	LOB domain-containing protein 27