PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009613197.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 281aa MW: 32331.4 Da PI: 9.8433

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009613197.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.8	6.5e-27	31	117	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +YneYA +GFsvrk++ +k+k +g +t+r+f+C keg+r+++k++ ++ +++r+etrtgC a ++++++++gk+++t+++++HnH+l XP_009613197.1 31 CYNEYAAAIGFSVRKEYANKNKVQGYVTSRKFTCHKEGYRSKDKRD-QTVQKHRKETRTGCLAYIVISRQSNGKFRITSFDEKHNHPL 117 7****************************************999.99999********************************98 PP
2	FAR1	87.7	1.7e-27	174	261	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +YneYA +GFsvrk++ +k+k +g +t+r+f+C keg+r+++k++ ++ +++r+etrtgC a++ ++++++gk+++t++e++HnH+l XP_009613197.1 174 WYNEYAAAMGFSVRKEYANKNKVQGYVTSRKFTCHKEGYRSKDKRD-RTVQKHRKETRTGCLAHIIISRQSNGKFRITSFEEKHNHPLD 261 7****************************************999.99999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.3E-24	31	117	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.2E-24	174	262	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MEISSCESQG GFNVPIKLGM EFDSDEHAYE CYNEYAAAIG FSVRKEYANK NKVQGYVTSR 60 KFTCHKEGYR SKDKRDQTVQ KHRKETRTGC LAYIVISRQS NGKFRITSFD EKHNHPLPSS 120 LSHMLPSQRK INVAQAHEVT ARFMEITSSE SQGGCNVPIK LGMEFDSDEH AYEWYNEYAA 180 AMGFSVRKEY ANKNKVQGYV TSRKFTCHKE GYRSKDKRDR TVQKHRKETR TGCLAHIIIS 240 RQSNGKFRIT SFEEKHNHPL DPSSLSHVLP TQRKIKVAQS T

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009613197.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X2
TrEMBL	A0A1S4B8X2	0.0	A0A1S4B8X2_TOBAC; protein FAR1-RELATED SEQUENCE 12-like isoform X2
STRING	XP_009613191.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	1e-27	FAR1-related sequence 7