PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009613198.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 181aa MW: 20656.5 Da PI: 9.5245

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009613198.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.2	2.4e-27	31	117	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +YneYA +GFsvrk++ +k+k +g +t+r+f+C keg+r+++k++ ++ +++r+etrtgC a ++++++++gk+++t+++++HnH+l XP_009613198.1 31 CYNEYAAAIGFSVRKEYANKNKVQGYVTSRKFTCHKEGYRSKDKRD-QTVQKHRKETRTGCLAYIVISRQSNGKFRITSFDEKHNHPL 117 7****************************************999.99999********************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-24	31	117	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MEISSCESQG GFNVPIKLGM EFDSDEHAYE CYNEYAAAIG FSVRKEYANK NKVQGYVTSR 60 KFTCHKEGYR SKDKRDQTVQ KHRKETRTGC LAYIVISRQS NGKFRITSFD EKHNHPLPSS 120 LSHMLPSQRK INVAQAHEVT ARMFHFMIKQ VFSMLIVATS HKVGEVCYPL PSPDSEKAKV 180 S

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009613198.1	1e-135	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X3
TrEMBL	A0A1S4B8Y8	4e-98	A0A1S4B8Y8_TOBAC; protein FAR1-RELATED SEQUENCE 7-like isoform X1
TrEMBL	A0A1S4B924	4e-98	A0A1S4B924_TOBAC; protein FAR1-RELATED SEQUENCE 7-like isoform X3
STRING	XP_009613191.1	1e-102	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	5e-19	FAR1 family protein