PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009613232.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 328aa    MW: 38125.6 Da    PI: 8.859
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009613232.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.35.8e-181197195
                    EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                    ffk + p++  +s+ l +p  f+ e+ +gk   +k ++l+d+ g++W ++l   kk++  ++++GW +F ++n L+ gDf++F +dg+  f   +k
  XP_009613232.1 11 FFKFFYPEN--SSQKLKIPTAFT-EYkNGK--LPKRISLRDRFGNVWPIEL--AKKGRDLYFQDGWVKFIEDNSLEFGDFLIFDYDGSGVF--DFK 97
                    677775544..44559******9.563555..8889***************..********************************997666..444 PP
2B332.71.3e-102313071089
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     + ++++l++p + +++++++   + ++ ++d++gr++e +++++k + r++l+kGW++ ++ n ++  D ++ ++++ + 
  XP_009613232.1 231 AKRRDQLYVPVDVVRDYNLE--LPPKMFFRDSEGRKFETEVNIWKDG-RIWLKKGWRKICRWNLVEKEDRCICEFMRGKA 307
                     567899***********776..6679***************999985.89********************9999886533 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-207103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.3399102IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-2110104IPR015300DNA-binding pseudobarrel domain
PfamPF023627.1E-161194IPR003340B3 DNA binding domain
SMARTSM010191.2E-1411102IPR003340B3 DNA binding domain
CDDcd100174.02E-131199No hitNo description
SuperFamilySSF1019362.94E-16218313IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-16218313IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.277222319IPR003340B3 DNA binding domain
CDDcd100172.65E-7223315No hitNo description
SMARTSM010190.0018225316IPR003340B3 DNA binding domain
PfamPF023629.0E-9232305IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDDAKKMEKG FFKFFYPENS SQKLKIPTAF TEYKNGKLPK RISLRDRFGN VWPIELAKKG  60
RDLYFQDGWV KFIEDNSLEF GDFLIFDYDG SGVFDFKLLG KTACEKKGAG VAVKVEEEEM  120
INIAHRKSEK PKGKKYLASD SISSSSSSYG DEDEEYMVEE EQEDEEEEYE EETNGKAIVI  180
CKKKAPCSKG VFKRATTIKR RDVPDQYGAE IFRSGRATQP KNPYFVAKIR AKRRDQLYVP  240
VDVVRDYNLE LPPKMFFRDS EGRKFETEVN IWKDGRIWLK KGWRKICRWN LVEKEDRCIC  300
EFMRGKANEV LYLQVTLVKA GGVSNPVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A7e-1341044104At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613232.10.0PREDICTED: B3 domain-containing protein REM20-like isoform X2
TrEMBLA0A1S4CJ090.0A0A1S4CJ09_TOBAC; B3 domain-containing protein At5g60140-like
STRINGXP_009613231.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-17B3 family protein