PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009613987.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 230aa    MW: 26379.4 Da    PI: 7.4921
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009613987.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.47.5e-2033115997
                     HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                         + +l++p  f++ ++g+   +   +l+d+ grsW+v +  +k+++ +++ +GW +Fv++n+Lk g+f++F+++g+s+f  +vk++
  XP_009613987.1  33 PQICNPQLRIPPAFLKFFNGD--IPANSMLQDLAGRSWKVVV--EKNDNDFFFMGGWPDFVRDNNLKFGEFLTFSYVGNSNF--YVKIY 115
                     55567789*******988666..45568**************..**********************************9999..88886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-2521118IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-2123118IPR015300DNA-binding pseudobarrel domain
CDDcd100172.09E-1825115No hitNo description
SMARTSM010191.9E-1827118IPR003340B3 DNA binding domain
PfamPF023622.6E-1835115IPR003340B3 DNA binding domain
PROSITE profilePS5086313.70440118IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MSQRKKVKDK MVTSIEQVTI PDHLPEFFKI YHPQICNPQL RIPPAFLKFF NGDIPANSML  60
QDLAGRSWKV VVEKNDNDFF FMGGWPDFVR DNNLKFGEFL TFSYVGNSNF YVKIYGINGS  120
LKWDVTAIKE PELHPLDEEI VQEIGTAAPP ADQALNGSGD LVVYAPSFDI VIKPSYIRKK  180
RLVLPLKSKD QILDVFKNFQ ALVERQIGKK LKYIYLDNGG EYISPFDNYC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-132611810102At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754443e-36HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613984.11e-132PREDICTED: B3 domain-containing protein At3g06220-like
RefseqXP_009613985.11e-132PREDICTED: B3 domain-containing protein At3g06220-like
TrEMBLA0A1S4DDC81e-122A0A1S4DDC8_TOBAC; B3 domain-containing protein At3g06220-like isoform X1
STRINGXP_009613984.11e-132(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-18B3 family protein