PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009614307.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 313aa    MW: 34989.4 Da    PI: 6.6317
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009614307.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.43e-14121167354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  XP_009614307.1 121 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 167
                     79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.136118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-11121167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-15122176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-15122174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-13124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.40E-5131170No hitNo description
Gene3DG3DSA:3.30.70.2602.3E-4206260No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MQPQSFNINP VHFPSNSEMS QILPWTLPPV QPFNPVHHHH VDPFLLPPTP SPYGGLFNRR  60
VPQFAYEGTT SSDHHLRFIS DTLGHVVHHQ PAGSAPFGLQ AELQKMTAQE IMDAKALAAS  120
KSHSEAERRR RERINNHLAK LRSLLPNTTK TDKASLLAEV IQHVKELKRQ TSLIAETSPV  180
PTEIDELTVD NASDEFEDGK FVIKASLCCE DRSDLLPDLI KTLKTLRLKT LKAEITTLGG  240
RVRNVLFITG DHNYNQEDDL STSDDLDLQQ QQPQYSISSI QEALKAVMEK SSGDDSASGN  300
VKRQRTNNIN ILS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126131ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755173e-74HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009614307.10.0PREDICTED: transcription factor bHLH30-like
RefseqXP_016496563.10.0PREDICTED: transcription factor bHLH30-like, partial
RefseqXP_018630033.10.0PREDICTED: transcription factor bHLH30-like
SwissprotQ9S7Y11e-101BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A1S4C6320.0A0A1S4C632_TOBAC; transcription factor bHLH30-like
STRINGXP_009614307.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40832444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.17e-83bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]