PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009615010.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 114aa    MW: 13562.1 Da    PI: 8.9793
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009615010.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY25.82.1e-0894113221
                     --SS-EEEEEEE--TT-SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefp 21 
                      Dgy+WrKYG+K+vk++++ 
  XP_009615010.1  94 YDGYKWRKYGKKKVKSNTNL 113
                     5***************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-881114IPR003657WRKY domain
SuperFamilySSF1182909.15E-786113IPR003657WRKY domain
PROSITE profilePS5081110.33888114IPR003657WRKY domain
PfamPF031069.6E-595114IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MTQDCGYNFQ DWDFNNFQDF ESSSFLDQLL VDYSPTNNNF NTSLSENPNM QEISSTNINR  60
LKEKAEEGKK KEKMNERHVQ AIAFRTKTQL EILYDGYKWR KYGKKKVKSN TNLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754519e-35HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009615010.23e-80PREDICTED: probable WRKY transcription factor 45
TrEMBLA0A1S4D1X99e-77A0A1S4D1X9_TOBAC; probable WRKY transcription factor 45
STRINGXP_009615010.11e-79(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA141921013