PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009615322.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 216aa    MW: 25203.1 Da    PI: 9.5685
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009615322.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.22.1e-231053245
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    r e +snrqvt++kRr gilKKA+E+SvLCd+++++++fs+tgk
  XP_009615322.1 10 RLETSSNRQVTYCKRRSGILKKAKEISVLCDIDILLLMFSPTGK 53
                    67899*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.02161IPR002100Transcription factor, MADS-box
SMARTSM004324.8E-29160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-26295IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-19323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-191256IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MGRVRINIRR LETSSNRQVT YCKRRSGILK KAKEISVLCD IDILLLMFSP TGKPTLFQGE  60
RSNFDEIIAK FAQLTPQERA KRKLESLETL RKTFKKLDQD VGVQEFLDAS DPSVEELHNQ  120
VKVLQSRLTD VEKRLSWWSN SDKINKVEHL TQMECELRES LTVHVRKLQS MTHLHLPMGS  180
RDMGCSGDIH LLQNVLMFWT MGKNWSLTDQ DRQLQY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-16192190MEF2 CHIMERA
6byy_B4e-16192190MEF2 CHIMERA
6byy_C4e-16192190MEF2 CHIMERA
6byy_D4e-16192190MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009615322.11e-160PREDICTED: agamous-like MADS-box protein AGL65 isoform X1
SwissprotQ7X9I03e-65AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLA0A3Q7FR618e-93A0A3Q7FR61_SOLLC; Uncharacterized protein
STRINGXP_009615322.11e-159(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76402124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.11e-67AGAMOUS-like 65
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]