PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009615646.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 82aa    MW: 9132.24 Da    PI: 8.7779
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009615646.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA31.42.5e-102948120
            GATA  1 CsnCgttkTplWRrgpdgnk 20
                    C+ CgttkTplWR gp g+k
  XP_009615646.1 29 CADCGTTKTPLWRGGPAGPK 48
                    ******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501149.7232346IPR000679Zinc finger, GATA-type
SMARTSM004010.0052365IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.37E-52447No hitNo description
Gene3DG3DSA:3.30.50.101.3E-72846IPR013088Zinc finger, NHR/GATA-type
PfamPF003209.4E-82948IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MVDLSDKSIR SEEMSSEISS PERSDVKTCA DCGTTKTPLW RGGPAGPKEK DKSASGVEQR  60
RQETKEINGI WKQKHWTTAP KL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239796.12e-20GATA transcription factor 17-like isoform X2
RefseqXP_006345974.12e-20PREDICTED: GATA transcription factor 17-like isoform X3
RefseqXP_006345975.12e-20PREDICTED: GATA transcription factor 17-like isoform X4
RefseqXP_015076167.12e-20GATA transcription factor 17-like isoform X2
TrEMBLM1C5G54e-19M1C5G5_SOLTU; Uncharacterized protein
STRINGSolyc05g054400.2.15e-18(Solanum lycopersicum)
STRINGPGSC0003DMT4000602415e-18(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.12e-11GATA transcription factor 23