PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009615786.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 333aa    MW: 36183.3 Da    PI: 6.6841
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009615786.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.95.5e-3448102155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  XP_009615786.1  48 KQRLRWTNELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 102
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.33745105IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-3247103IPR009057Homeodomain-like
SuperFamilySSF466894.12E-1847102IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-2648103IPR006447Myb domain, plants
PfamPF002491.4E-950101IPR001005SANT/Myb domain
PfamPF143793.0E-22134180IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MYQPKGVPGS SLVHNNAAVH SQLLDCDDGS MDPTSGGNNN SNPSLASKQR LRWTNELHER  60
FVDAVAQLGG PDRATPKGVL RVMGVQGLTI YHVKSHLQKY RLAKYLPDSS SDGKKPDKKE  120
SRDMLSSLDG SSGVEITTAL KLQMEVQKRL HEQLEVQKQL QLRIEAQGKY LKKIIEEQQR  180
LSGVLSEVPG SGVTAPPTGD NGPESDNRSE PGTPAPTSES PNVEKHVKAH APTKSLSVDE  240
SFSLQHEPLT PDSDCPESSP MESPNGERSS KKQRVATSAA FAKDDVALTH QILESSLSSP  300
YQQPPSVFIT RDQFNRTSGL SLGIEDQKVS GNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-2448105259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-2448105259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A8e-2448105158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-2448105158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-2448105158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-2448105158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-2448105259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-2448105259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-2448105259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-2448105259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-2448105259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-2448105259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009615786.10.0PREDICTED: myb family transcription factor PHL7-like
SwissprotQ9SJW01e-124PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A1J6L7L50.0A0A1J6L7L5_NICAT; Myb family transcription factor phl7
STRINGXP_009615786.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27962451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-110G2-like family protein