PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009616464.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 260aa    MW: 29992 Da    PI: 6.7954
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009616464.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.82.9e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+ rqvtfskRr+g+lKK +ELSvLCda++ +iifss+gkl+eyss
  XP_009616464.1  9 KRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYSS 59
                    79***********************************************96 PP
2K-box62.41.8e-21821671196
           K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                     + +  +l+ e++k+k+ + nLq ++ +++G+dL+s +++eL++Le+qLe +++k+R++K+el+ +q+e+l++ ek+l+++n+++ +
  XP_009616464.1  82 QDNRVELYDEITKMKRDTLNLQLSLQRYKGDDLSSAQYEELNELEKQLEFAVNKVRARKQELMQQQMENLRRTEKMLEKDNQEMYQ 167
                     44566899*************************************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.749161IPR002100Transcription factor, MADS-box
CDDcd002651.75E-43278No hitNo description
SuperFamilySSF554553.27E-31279IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.6E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-303859IPR002100Transcription factor, MADS-box
PfamPF014862.8E-1985168IPR002487Transcription factor, K-box
PROSITE profilePS5129714.07685180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGRGKIEVKR IENKTSRQVT FSKRRAGLLK KTHELSVLCD AQIGLIIFSS KGKLFEYSSQ  60
PHSMSEIISR YLQTTGASIP VQDNRVELYD EITKMKRDTL NLQLSLQRYK GDDLSSAQYE  120
ELNELEKQLE FAVNKVRARK QELMQQQMEN LRRTEKMLEK DNQEMYQWLM SNQMNKQQSA  180
SVMEHNDEEA ITELNLMGEQ PLLSQFSFFG EEQVQPSSIN VLQLAAASYS TTTCAYRLQP  240
SHPKLHDSDL PGCSYAHLKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-19173171MEF2C
5f28_B2e-19173171MEF2C
5f28_C2e-19173171MEF2C
5f28_D2e-19173171MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616464.10.0PREDICTED: MADS-box protein FBP24
RefseqXP_009616465.10.0PREDICTED: MADS-box protein FBP24
RefseqXP_016503027.10.0PREDICTED: MADS-box protein FBP24-like
SwissprotQ9ATE51e-139FBP24_PETHY; MADS-box protein FBP24
TrEMBLA0A1S4CP410.0A0A1S4CP41_TOBAC; MADS-box protein FBP24-like
STRINGXP_009616464.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.22e-64MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]