PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009616468.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ERF

Protein Properties

Length: 214aa MW: 23915.9 Da PI: 9.7092

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009616468.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.3	1e-19	5	55	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +++kGVr++ +g+Wv+eIr+p kr++lg+f taeeAa+a+++a+ ++g XP_009616468.1 5 KKFKGVRQRQ-WGSWVSEIRHP-----LlkKRIWLGTFETAEEAARAYDEAAILMNG 55 59***999.******8.....335********************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	7.88E-34	5	65	No hit	No description
SMART	SM00380	1.8E-38	6	69	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.417	6	63	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.7E-20	6	64	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.2E-31	6	63	IPR001471	AP2/ERF domain
Pfam	PF00847	3.8E-12	6	55	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-10	7	18	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-10	29	45	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MVQSKKFKGV RQRQWGSWVS EIRHPLLKKR IWLGTFETAE EAARAYDEAA ILMNGQVAKT 60 NFPIVKENHV NNSNDKKFPL SSSSTLSTVL NAKLRKCCKY PAPSMTCLRL DNDNCHIGVW 120 QKRSGKNSGS NWITKIELGK KEEPHQSHES MNSWSLSSSS GSTSSSSSSE LGISKPLDEE 180 NRAAMQMVEE LLYWNSPFSS APISDLSPSF SNSK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	9e-17	5	64	1	61	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A	1e-16	6	63	14	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:15319479}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269\|PubMed:15319479}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	1e-103	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	1e-103	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009616468.1	1e-157	PREDICTED: ethylene-responsive transcription factor WIN1-like
Swissprot	Q3E958	4e-70	SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBL	A0A1S3ZLH7	1e-154	A0A1S3ZLH7_TOBAC; ethylene-responsive transcription factor WIN1-like
STRING	XP_009616468.1	1e-156	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1352	24	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25390.2	5e-57	ERF family protein

Publications ? help Back to Top
Djemal R,Khoudi H Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum). Protoplasma, 2015. 252(6): p. 1461-73 [PMID:25687296] Sadler C, et al. Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition. Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344 [PMID:26965486]