PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009616634.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 221aa MW: 26015.9 Da PI: 10.5072

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009616634.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	43.6	3.7e-14	13	50	5	42
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 ++++r+v + R ++++KKA ELS+LC++e+ +++f + XP_009616634.1 13 DERRRSVVLQERMETLFKKADELSILCGVEIGIVVFRT 50 789*******************************9965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.5E-11	1	61	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	16.385	1	48	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.99E-15	2	85	No hit	No description
PRINTS	PR00404	1.6E-6	3	23	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.62E-17	3	95	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-13	13	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-6	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-6	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MARKKIKMAR LVDERRRSVV LQERMETLFK KADELSILCG VEIGIVVFRT DKINNESVWP 60 SRDKFKQLLL RFLDKPLVER LKKLTTHEKF LRKEMEKNVR KIDQQKVEEK EMEQLFKQLY 120 LGEKTIFELD KRQLIGVGNL AMKAKEKAVE RRIRLKLQDR VWLPIDHIPL RVAPLNVQDQ 180 CLQLLVDDPL ALRLAPLNVQ DQRLQLLVDD PLALRLAPPG N

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009616634.1	1e-155	PREDICTED: agamous-like MADS-box protein AGL80
Refseq	XP_016502248.1	1e-155	PREDICTED: agamous-like MADS-box protein AGL80
TrEMBL	A0A1S4CLZ8	1e-154	A0A1S4CLZ8_TOBAC; agamous-like MADS-box protein AGL80
STRING	XP_009616634.1	1e-155	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA378	20	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05860.2	7e-16	M-type_MADS family protein