PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009616719.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 361aa    MW: 39859.6 Da    PI: 6.2534
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009616719.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.55.2e-21167217256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  XP_009616719.1 167 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 217
                     59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF819954.97E-593152No hitNo description
CDDcd000182.67E-34166226No hitNo description
Gene3DG3DSA:3.30.730.102.6E-32167225IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-23167225IPR016177DNA-binding domain
PROSITE profilePS5103223.235167224IPR001471AP2/ERF domain
SMARTSM003805.8E-38167230IPR001471AP2/ERF domain
PfamPF008471.8E-14168217IPR001471AP2/ERF domain
PRINTSPR003673.5E-11168179IPR001471AP2/ERF domain
PRINTSPR003673.5E-11190206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MAAAIDIYSN NSSYFSDPLS EELMKALEPF MKGASCSSSV SPSLSPSSSS PSTSSSCFYP  60
FGEPNLYTDF CTIPSLSFNH MGLVAETGSI GLNHLTPSQI FQIQAQIQFQ NQQQQQQQQL  120
LLQQQQSLGL LPSTPTYSKN LNSMNYLGLK PVPMKQTGGA VQKPTKLYRG VRQRHWGKWV  180
AEIRLPKNRT RLWLGTFDTA EEAALAYDKA AYKLRGEFAR LNFPHLRHQL NNELSDFKPL  240
HSSVDAKLQA ICQNLANPKN PTNSDDLSSN NNTVSKPRKS RKAAAKVDSG SVQDCPENVN  300
VKIEATSSSS PAPSEESSLS VVTSSPESDI TFLDFIEPSF DESEDFFLPK YPSVEIDWAA  360
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22166224160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN6494670.0FN649467.1 Nicotiana benthamiana mRNA for transcription factor DREB2a.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616719.10.0PREDICTED: ethylene-responsive transcription factor RAP2-13-like
TrEMBLA0A1S3WZP10.0A0A1S3WZP1_TOBAC; ethylene-responsive transcription factor RAP2-13-like
STRINGXP_009616719.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.17e-48ERF family protein