PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009616789.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 252aa    MW: 29093 Da    PI: 9.8989
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009616789.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.91.3e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+ rqvtfskRr g+lKK +E+SvLCda+va+i+fs +gklyeys+
  XP_009616789.1  9 KRIENKISRQVTFSKRRSGLLKKTHEISVLCDADVALIVFSAKGKLYEYST 59
                    79***********************************************96 PP
2K-box965.8e-3276173299
           K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                     ++++ ++++++  e+++ e+ kL ++ie Lqr++Rh++GedL+s  l+e + LeqqL+++lk+iR++Kn+l++e+i++lqkkekelqe+n+ ++k
  XP_009616789.1  76 AERKLNANDSEPKENWTLEYPKLMSRIELLQRNIRHYMGEDLDSFGLREFHGLEQQLDTALKRIRTRKNQLMHESISQLQKKEKELQEQNHLMSK 170
                     5566777888889*******************************************************************************999 PP

           K-box  97 kle 99 
                     kl+
  XP_009616789.1 171 KLK 173
                     986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.651161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-33292IPR002100Transcription factor, MADS-box
CDDcd002651.69E-41276No hitNo description
PRINTSPR004041.3E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.8E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-293859IPR002100Transcription factor, MADS-box
PfamPF014863.4E-2785172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.0888178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGRGRVEMKR IENKISRQVT FSKRRSGLLK KTHEISVLCD ADVALIVFSA KGKLYEYSTE  60
SSMESILERY ESYSYAERKL NANDSEPKEN WTLEYPKLMS RIELLQRNIR HYMGEDLDSF  120
GLREFHGLEQ QLDTALKRIR TRKNQLMHES ISQLQKKEKE LQEQNHLMSK KLKGNEKQQT  180
EDAQWGKPNP GQSSTPFILP QIPSQSPPHV PNLTIGGPFQ STGFTSTDEG QTRHGSNSLI  240
PPWMLHHLRN KG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-19174173MEF2 CHIMERA
6byy_B5e-19174173MEF2 CHIMERA
6byy_C5e-19174173MEF2 CHIMERA
6byy_D5e-19174173MEF2 CHIMERA
6bz1_A6e-19174173MEF2 CHIMERA
6bz1_B6e-19174173MEF2 CHIMERA
6bz1_C6e-19174173MEF2 CHIMERA
6bz1_D6e-19174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616788.10.0PREDICTED: truncated transcription factor CAULIFLOWER A-like
RefseqXP_009616789.10.0PREDICTED: truncated transcription factor CAULIFLOWER A-like
RefseqXP_009616790.10.0PREDICTED: truncated transcription factor CAULIFLOWER A-like
RefseqXP_009616791.10.0PREDICTED: truncated transcription factor CAULIFLOWER A-like
RefseqXP_009616792.10.0PREDICTED: truncated transcription factor CAULIFLOWER A-like
RefseqXP_009616793.10.0PREDICTED: truncated transcription factor CAULIFLOWER A-like
RefseqXP_016492111.10.0PREDICTED: agamous-like MADS-box protein AGL8 homolog isoform X1
RefseqXP_016492112.10.0PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2
RefseqXP_016492113.10.0PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2
RefseqXP_016492114.10.0PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2
RefseqXP_016492115.10.0PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2
RefseqXP_016492116.10.0PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2
RefseqXP_016492117.10.0PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2
RefseqXP_016492118.10.0PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2
SwissprotD7SMN61e-100FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A1S4BTA00.0A0A1S4BTA0_TOBAC; agamous-like MADS-box protein AGL8 homolog isoform X1
TrEMBLA0A1S4BTA30.0A0A1S4BTA3_TOBAC; truncated transcription factor CAULIFLOWER A-like isoform X2
STRINGXP_009616788.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.15e-81AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]