PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009616919.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 88aa    MW: 10381.8 Da    PI: 9.9032
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009616919.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.8e-10347345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WTt   +++ +a +++ ++   +W+ Iar++g g+++++++ ++ 
   XP_009616919.1  3 SWTTRQNKKFEEALALFDKEtpdRWHNIARCVG-GKSAEEVRRHYE 47
                     6*****************99*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.812154IPR017884SANT domain
SMARTSM007171.5E-6152IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-4356IPR009057Homeodomain-like
CDDcd001677.60E-7350No hitNo description
SuperFamilySSF466891.56E-12357IPR009057Homeodomain-like
PfamPF002491.7E-7347IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MASWTTRQNK KFEEALALFD KETPDRWHNI ARCVGGKSAE EVRRHYELLV KDIMQIENGH  60
VPLPNYKAVE SNSRYANEQR LLKNLKLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-294881193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616919.17e-61PREDICTED: protein RADIALIS-like 6 isoform X1
RefseqXP_016444191.17e-61PREDICTED: protein RADIALIS-like 6
SwissprotQ1A1734e-37RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1S3XW742e-59A0A1S3XW74_TOBAC; protein RADIALIS-like 6
STRINGXP_009616919.13e-60(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-39RAD-like 6