PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009616962.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 902aa    MW: 98439.8 Da    PI: 6.8682
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009616962.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.94.5e-19321420198
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k l+ sd+++ grlvlpkk+ae++    +  ++e+  l+++d++g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e
  XP_009616962.1 321 FEKMLSASDAGRIGRLVLPKKCAEAYfppiS--NPEGLPLKVQDLKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIVTFSRIE-PE 411
                     89**************************543..556667***************9989999999***9.********************887.56 PP

                     E..EEEEE- CS
              B3  90 felvvkvfr 98 
                     ++lv++ ++
  XP_009616962.1 412 GKLVMGCRK 420
                     656665554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-30317421IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-19318417IPR015300DNA-binding pseudobarrel domain
CDDcd100172.64E-23319420No hitNo description
PROSITE profilePS5086311.082321422IPR003340B3 DNA binding domain
SMARTSM010197.8E-23321421IPR003340B3 DNA binding domain
PfamPF023622.2E-16321420IPR003340B3 DNA binding domain
PROSITE profilePS5105013.676576626IPR011124Zinc finger, CW-type
PfamPF074965.8E-11581623IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 902 aa     Download sequence    Send to blast
MSSSAAPSSA TKVCFNTNCN QFVERPKKGW RRRTGEFADL CDRCASAYDD GKFCETFHLK  60
TSGWRSCESC GKQIHCGCIV SFHTFVLLDA GGIECLSCAR KSFILPERIK DVNNWNPIAG  120
SGPVPWRQAP SLFNGSAIQN ELQPRTPFLD ATGSVDRLCL GERPSTSSSD NNRKDSCEKL  180
MNGNLKIGVP GTLENGYAGL NHEEPPKSCI SGPPQLSYAK NDLSAPSFSL TIGSACKNEP  240
TDHSKVSVSL QQQTTLSTPL GKQLGGHATV DYAGETQVRN SKTRGDGRGK HHLLPRYWPR  300
ITDEELQQIS GDSNSVITPL FEKMLSASDA GRIGRLVLPK KCAEAYFPPI SNPEGLPLKV  360
QDLKGKEWMF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DIVTFSRIEP EGKLVMGCRK  420
ASTTLTADQG SEACSNSNGV VTNGNVNTKS TKFSEVLANS TKKGFSSTTH VAPADSTIAW  480
AETKMSDDMA MEFLGNNRSI RCKRKSSTLG SKTKRLRIDN EDLVELKVTV VQAQGLMRPP  540
SSDAPTVIVI EGCEFEEYEQ DAPIIGRPAI PSVDHLGEKI QWVQCEDCFK WRKVPDSALL  600
PSRWTCSENS WDSERSVCSA DQELTANDLR DLLPRINKGL LKLHDLCAAA KKMKASKQET  660
DLVEALDGLD ALANLAILEE GETLPASSQA TTKHPRHRPG CTCIVCIQPP SGKGPKHKQS  720
CDCIVCKSVK RRFKTLMLKR EKKLSEKEAE AACQKLQPQL AGQLLDAGDI QESIDDAGHF  780
SPQRGELNNE GYADDPNYPN EKKSSALPCK GEIDLNAKPE RDDELSPGSD SGSIMHILQV  840
AAEQYVRHCG NGSFTGNHEN GDGTGETNPN NCVIVGDTNQ TDVDHNRPLS IGTAASLAPN  900
NQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-642994222125B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-171HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616962.10.0PREDICTED: B3 domain-containing protein Os07g0563300-like isoform X5
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A1U7Y6L40.0A0A1U7Y6L4_NICSY; B3 domain-containing protein Os07g0563300 isoform X3
STRINGXP_009616960.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-170HSI2-like 1