PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009616985.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 535aa    MW: 60589.4 Da    PI: 7.0122
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009616985.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.71.2e-1410733299
                    --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                    ++++  led+sg++W+v++  + ++g+  +++GW +F +++gL+ gDf+vF++++ + f   v++++k
  XP_009616985.1 10 TDQETYLEDSSGQRWRVTV--CDHKGSLAIRQGWPKFSSEHGLNLGDFLVFYYVEGQYF--IVQIYDK 73
                    456899*************..*******************************9876666..9999887 PP
2B331.14.1e-104535281492
                     T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3  14 grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     + l lp +  +++  ++ k e   + l+ ++ + W + +   ++sg  vlt+GWk F+ a gL+ gD ++F+l++  + e+
  XP_009616985.1 453 DFLELPESW-RKYlmKKAKLERWIIFLRGPDKKIWPILY--HRRSGVDVLTNGWKFFAAAYGLNRGDDCLFELEN--QLEC 528
                     556666665.3665544455667899999**********..9999999************************865..4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.507174IPR003340B3 DNA binding domain
SMARTSM010190.0035274IPR003340B3 DNA binding domain
PfamPF023624.3E-12273IPR003340B3 DNA binding domain
CDDcd100173.29E-12272No hitNo description
SuperFamilySSF1019361.77E-16276IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.5E-161078IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.123440535IPR003340B3 DNA binding domain
SMARTSM010190.032445533IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-12448528IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-9449524No hitNo description
Gene3DG3DSA:2.40.330.102.0E-10452526IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MFARSVSHLT DQETYLEDSS GQRWRVTVCD HKGSLAIRQG WPKFSSEHGL NLGDFLVFYY  60
VEGQYFIVQI YDKSGCQKIK FYSDFCKGKR KTRTYPEKTS QVKLLQTTDI NPVNKRSKIS  120
AVSESEKVTC KAHITKFATN IDADTGKGQL VYPAVYVDES FCMVDRDAQY HQGDDRLCLH  180
LSSFEMPASK PLAEGTSSLL KADDGNSNHV ETNLRSQTEP NLVVVADYLN SEELLPKFEA  240
EITGSDMVPA EDIPLLSQKD QNDCPSGIIS SSFLKPAANV NKNDDVSNVT KYQNHWMSTD  300
TNCHMMLQSD NKDGRCTGIN QITREKSNEA SQFARETRLV KKEFEETAAK AYYPARAISA  360
RETRLVKKEF EETAAKAYYP ARAISARETR LVKKEFEETA AKAYYPARAI SDSGKEPANG  420
NEKVIKSEPA DSGDMPSLTA VSYSCLLEVD GRDFLELPES WRKYLMKKAK LERWIIFLRG  480
PDKKIWPILY HRRSGVDVLT NGWKFFAAAY GLNRGDDCLF ELENQLECIF AVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616984.10.0PREDICTED: B3 domain-containing protein Os01g0905400-like isoform X9
RefseqXP_009616985.10.0PREDICTED: B3 domain-containing protein Os01g0905400-like isoform X9
TrEMBLA0A1J6IKJ00.0A0A1J6IKJ0_NICAT; B3 domain-containing protein
STRINGXP_009616981.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.12e-08B3 family protein