PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009617043.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 154aa    MW: 17411.2 Da    PI: 4.7319
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009617043.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.64.7e-13551281696
                     EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  16 lvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     + lp k + e   g     ++  ++ + sg++W++ +  ++  +r  +++GWk+Fv++n+Lk gD +vF+l + s++++++kv
  XP_009617043.1  55 MFLPAKICPELtpG-----EV-PVVLTCSGKKWDMCC--SGDYRR-RFKQGWKNFVNDNNLKIGDGLVFELLQCSRAKMTFKV 128
                     66666666555322.....22.2456679********..444444.4899********************7755555555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.65E-1637131IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.4E-1537132IPR015300DNA-binding pseudobarrel domain
CDDcd100179.48E-1738132No hitNo description
SMARTSM010190.003339134IPR003340B3 DNA binding domain
PROSITE profilePS5086312.12540134IPR003340B3 DNA binding domain
PfamPF023623.3E-1154128IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MEEELQKMLY KGPAKNAKIG KSMADSEDED ISPLCGKPYF DFILGESNLE PKYMMFLPAK  60
ICPELTPGEV PVVLTCSGKK WDMCCSGDYR RRFKQGWKNF VNDNNLKIGD GLVFELLQCS  120
RAKMTFKVQI LRGDFPAELM TEPEDGTAEN PIVL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018630850.11e-106PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBLA0A1S3ZQ222e-93A0A1S3ZQ22_TOBAC; B3 domain-containing protein Os04g0386900-like
STRINGXP_009617043.11e-110(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18192154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.19e-08related to vernalization1 1