PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009617106.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 138aa    MW: 15225.5 Da    PI: 9.3302
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009617106.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.86.9e-141358348
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                    i  +  r vtfskRr+g++KK   L  +++a+va i+fs+tgk y+
  XP_009617106.1 13 IIKEASRMVTFSKRRKGLFKKTLQLESMTGARVAAIVFSPTGKPYT 58
                    5567789***********************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-17362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.245363IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-18463IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-13525IPR002100Transcription factor, MADS-box
PfamPF003191.8E-181358IPR002100Transcription factor, MADS-box
CDDcd001201.33E-151858No hitNo description
PRINTSPR004044.1E-132540IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-134061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MGTGKKKIEI KQIIKEASRM VTFSKRRKGL FKKTLQLESM TGARVAAIVF SPTGKPYTCG  60
DVSSAIDRHF SSSIDPLSGS GDVCISGSRS TTSRNGLRNW LENIDVEELL LLKEQLEGTR  120
EKLACMEDSE SFLALFMS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009617106.13e-97PREDICTED: MADS-box transcription factor 23-like
TrEMBLA0A1S4D6M91e-81A0A1S4D6M9_TOBAC; agamous-like MADS-box protein AGL29
STRINGXP_009617106.11e-96(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17310.13e-13M-type_MADS family protein