PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009617115.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 157aa MW: 17429.5 Da PI: 4.2315

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009617115.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.8	0.00022	7	43	19	54
HHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 19 afeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +++ L ++l + s ++s+ ++Ka+i +A +YI +L XP_009617115.1 7 KIALLNQHLEQlGSITNSPSVNKASIIVHASKYIEEL 43 77888888888655677777**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.74E-5	10	58	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.0E-4	11	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	0.00351	91	147	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MGSKDQKIAL LNQHLEQLGS ITNSPSVNKA SIIVHASKYI EELKERIDKL NEDVSTSQPS 60 HVDDENSLPL VTVETLEKGF LINVFSEKNC PGLLVSILEA FEELGLELSD ARVSCSDSFR 120 LEAVSETEGQ IDRVDAQMVK QSVLEAIRNW SQSNEQD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009617115.1	1e-110	PREDICTED: transcription factor bHLH61-like isoform X1
TrEMBL	A0A1S3ZCE7	1e-108	A0A1S3ZCE7_TOBAC; transcription factor bHLH61-like isoform X1
STRING	XP_009617115.1	1e-110	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2945	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10570.1	1e-07	bHLH family protein