PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009617394.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 174aa    MW: 19293.7 Da    PI: 10.5273
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009617394.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.000774668123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C++ F ++  L  H++ H
  XP_009617394.1 46 FSCNFCKRKFYSSQALGGHQNAH 68
                    89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.2E-43972IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.46E-74273No hitNo description
PROSITE profilePS5015710.994673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MISAVDGNQA TSVLDQGEWL NLSLGRNLPS TSKESESHIP TSAKVFSCNF CKRKFYSSQA  60
LGGHQNAHKR ERGAVRQYQS QSQRMITMMA LPINNPMFRS LGMIPHSLVH KSGRDASATV  120
ATFSEAGAGF QITSHTNQMN RSFDLKWPGS FQLNQQQSKD HASNPNKLDL NLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755221e-166HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009617394.11e-129PREDICTED: zinc finger protein 7-like
RefseqXP_016483734.11e-129PREDICTED: zinc finger protein 7-like
TrEMBLA0A1S4B4G41e-127A0A1S4B4G4_TOBAC; zinc finger protein 7-like
STRINGXP_009617394.11e-128(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32691313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24625.12e-18zinc finger protein 7