PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009617678.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 185aa    MW: 21262.3 Da    PI: 10.3813
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009617678.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF626.9e-201656242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    +ien+ nrqvtfskRrng++KKA+EL v+++aev +i+  +
  XP_009617678.1 16 KIENQNNRQVTFSKRRNGVFKKANELAVMTGAEVGIIVCPQ 56
                    79***********************************9755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.923767IPR002100Transcription factor, MADS-box
SMARTSM004327.0E-24766IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-22977IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-16929IPR002100Transcription factor, MADS-box
PfamPF003192.4E-211663IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-162944IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-164465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MSTRWTKVRK SVHLAKIENQ NNRQVTFSKR RNGVFKKANE LAVMTGAEVG IIVCPQGSKP  60
YSFGHPNVNE TIKKYVGEER PPSPSSPGID DKYVQMFRKA NSRELNTRLN SLQDQLNFAL  120
NLKSKLKQMN KKEESQQEWF KGPIEKMNYT EASMLKEGLE DLLLKVKNYG TERGYGYENG  180
KRKAE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009617678.11e-136PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1U7VX011e-120A0A1U7VX01_NICSY; agamous-like MADS-box protein AGL62
STRINGXP_009617678.11e-135(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3829435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-26AGAMOUS-like 61