PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009617756.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 331aa    MW: 36992 Da    PI: 10.0077
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009617756.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.6e-1368112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
   XP_009617756.1  68 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 112
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-1662118IPR009057Homeodomain-like
PROSITE profilePS5129415.40863117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-666118IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-1866115IPR006447Myb domain, plants
SMARTSM007175.3E-1167115IPR001005SANT/Myb domain
PfamPF002492.7E-1168112IPR001005SANT/Myb domain
CDDcd001672.05E-870113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MVSVYPTPPA GQDFYYMGDP MKMGLPGLHS IQSGSNGASS HGNSNSGLVV PDDHNKKTRK  60
PYTITKSRES WTEQEHDKFL EALQLFDRDW KKIEAFVGSK TVIQIRSHAQ KYFLKVQKSG  120
TSEHVPPPRP KRKAAHPYPQ KAPKKVVSQV GSIQFQPPGA LPEPGFGIGP DSLAVPGNTI  180
NFSPWTYDNV PAISTTHMRK DDAQLSSGGV VQNCSSSSNE SMPRICTTKE SNAQKESKKQ  240
MKVMPNFAQV YRFIGSVFDP STRDHIQRLK KMDPIDVQTA LMLMKNLSFN LLSPEFEDHR  300
RFLSSYGLGA EKDKMDHPIK TDFRENAIRA V
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009617756.20.0PREDICTED: protein REVEILLE 6 isoform X2
SwissprotQ8H0W39e-97RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A1U7W8D50.0A0A1U7W8D5_NICSY; protein REVEILLE 6 isoform X3
STRINGXP_009617756.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9982478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.22e-84MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]