PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009618268.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 238aa MW: 27232.2 Da PI: 9.4125

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009618268.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	56.3	4.1e-18	10	50	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i n+s r+ tf kR++g++KK +ELS+LC+++++ ii+s+ XP_009618268.1 10 FITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAIIYSP 50 89**************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	7.2E-25	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.19E-24	1	85	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	16.904	1	49	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.19E-21	2	85	No hit	No description
PRINTS	PR00404	2.4E-9	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.7E-19	10	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.4E-9	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.4E-9	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0043078	Cellular Component	polar nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MTRKKVKLAF ITNDSARKAT FKKRKKGLMK KVSELSTLCG IDACAIIYSP YENQPEVWPN 60 TMGAQRVLAE FKRMPEMEQS KKMVNQESFI RQRIAKASEQ LKKQSKENRE KEMTEVMYQC 120 LAGKGLQNLN LGDLNDLDWV VDQNLKEINK RIEAFKKGAS TSSSAIVSQA VAPPLVEQKP 180 VVELGLEGMQ RTQTEWFNNW INNNTSEHQI EFGHGDEMIM PNFSDNHNTS VWPNAFFP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	24	RKKVKLAFITNDSARKATFKKRK
2	21	25	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00553	DAP	Transfer from AT5G48670	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ168510	0.0	FJ168510.1 Petunia x hybrida type I MADS box transcription factor (MADSy5) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009618268.1	1e-179	PREDICTED: agamous-like MADS-box protein AGL80
Refseq	XP_016489113.1	1e-179	PREDICTED: agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	4e-65	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	A0A1S4BJL1	1e-178	A0A1S4BJL1_TOBAC; agamous-like MADS-box protein AGL80
STRING	XP_009618268.1	1e-178	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1532	23	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	4e-59	AGAMOUS-like 80

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]