PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009618313.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 144aa    MW: 15971.1 Da    PI: 9.2074
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009618313.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.41.9e-181050242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    +i n+s r+ tf kR++g++KK +ELS+LC+++++ ii+s+
  XP_009618313.1 10 FITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAIIYSP 50
                    89**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.904149IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-21162IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-22160IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-10323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-191051IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MTRKKVKLAF ITNDSARKAT FKKRKKGLMK KVSELSTLCG IDACAIIYSP YENQPEEINK  60
GIEAFKKGAS TSSSSSSAIV SQAAAPPLVE QKSVVELGLE GIQRTQTEWF NDWMNNNTSE  120
QQIRFGYGDQ MIMPNCSDNH NTSV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFITNDSARKATFKKRK
22125KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1685103e-66FJ168510.1 Petunia x hybrida type I MADS box transcription factor (MADSy5) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009618313.11e-105PREDICTED: agamous-like MADS-box protein AGL86
TrEMBLA0A1S4BJL11e-43A0A1S4BJL1_TOBAC; agamous-like MADS-box protein AGL80
STRINGXP_009618313.11e-104(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15322367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.21e-24M-type_MADS family protein