PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009618478.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 178aa MW: 20502.3 Da PI: 9.6875

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009618478.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	50.8	2.1e-16	16	62	2	48
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 +e+k r+vtfskR++ ++ KAeE S+ ++a+v v++fs++gk XP_009618478.1 16 YVESKEARYVTFSKRKASLFRKAEEFSTVTGADVGVLLFSPSGKPCS 62 5799***************************************9655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.0E-22	7	66	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	20.717	7	67	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.98E-23	8	83	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.6E-13	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.0E-19	17	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.6E-13	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.6E-13	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MARRTSRGRQ KIEMKYVESK EARYVTFSKR KASLFRKAEE FSTVTGADVG VLLFSPSGKP 60 CSYTSTSVEK ITEKFREWKL QNADEGKSSV FQAFDDLCKD IQDENEKGKS RELRYKVMYP 120 GAEIPPDKER LEKLVEMKLR LVKINEAAKN HIRAERLKFD LNVVPEYEVG ESSGTHHS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009618478.1	1e-130	PREDICTED: agamous-like MADS-box protein AGL29 isoform X1
Refseq	XP_016436758.1	1e-130	PREDICTED: agamous-like MADS-box protein AGL29
TrEMBL	A0A1S3XAG8	1e-128	A0A1S3XAG8_TOBAC; agamous-like MADS-box protein AGL29
STRING	XP_009618478.1	1e-129	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1780	12	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	6e-20	AGAMOUS-like 29