PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009618484.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 795aa MW: 90463.4 Da PI: 6.2854

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009618484.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	49.5	8.4e-16	441	486	3	48
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 + isledl++++ ++ ++AA +L+v++++ KriCR++GI+RWP k XP_009618484.1 441 DMISLEDLQQNYGKKREEAAESLQVSVSTFKRICRKFGIDRWPTAK 486 679****************************************866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.957	422	512	IPR003035	RWP-RK domain
Pfam	PF02042	5.9E-16	443	489	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 795 aa Download sequence Send to blast
MCEQHKTLEF GTEEYNSNSN YGIPIPTQDV GFWQAECYSE IPAGSNFDIP SSSSNNLPGY 60 INFPANSTYN ENVEIIHDSF GKAAADQVVS RKLFCFANGH VLDPQRVDLF YLDLSKRAYQ 120 VTIHRHNGFD FFSLTKVVDV SDLFQLLKVF LSSKLRLMFL IDDEYSLLTD ELNLVVTGQR 180 IAGAYYTGLP GTANLDFPLL QPHLQMEVKL AFSLQNLMRS TMHYAISQAY SSRMTKSQNV 240 KSFVVCECEN ELFLDHCREN SSQSIQSFIP FGGNIKLSPC RVASVVYSLY LYGEVQENFS 300 ILGRVVDVSF SSVKFSYRTD PHSSPGHSQD YHFHGILSLS LLVPTEQSPV EFFEIVYCPQ 360 RAHLTSKDQR SPGTNKQKQY GLSPCLDSAV VQSSSNERQM LLEAFEDDAI YSHESQEVVA 420 ESQTNIQKKR KKSSTMWTAA DMISLEDLQQ NYGKKREEAA ESLQVSVSTF KRICRKFGID 480 RWPTAKRNKD KCLFSARKCD APLIAKVRTS QLLQNGMPCE DRETTCISRP KRKGKEKEAA 540 DNIEAINHFE EQPSEIQNRT PKRQAVDCAT KDSSCLNSIT GYVVDDMVST RMGVQAYLEA 600 ISIEQLNSIS CNENTSQNTK LLFDNLIALP LKDLINPEKE IYMKETLCIL AENLSFFSVE 660 QAKQIVELKF DFSTLVHSWR EYSQSQVCSQ KFFEDLERNR TLLATSAKDE ESLKVRYDEL 720 QSKKKELMAQ FEVVQKEQEG IAEQRREKTE QKKHLVSLAK EKASRTKEKQ LVMTIASAKL 780 NNLVDQWAAI QSLFM

Sequence ? help Back to Top

Protein Sequence Length: 795 aa Download sequence Send to blast

MCEQHKTLEF GTEEYNSNSN YGIPIPTQDV GFWQAECYSE IPAGSNFDIP SSSSNNLPGY  60
INFPANSTYN ENVEIIHDSF GKAAADQVVS RKLFCFANGH VLDPQRVDLF YLDLSKRAYQ  120
VTIHRHNGFD FFSLTKVVDV SDLFQLLKVF LSSKLRLMFL IDDEYSLLTD ELNLVVTGQR  180
IAGAYYTGLP GTANLDFPLL QPHLQMEVKL AFSLQNLMRS TMHYAISQAY SSRMTKSQNV  240
KSFVVCECEN ELFLDHCREN SSQSIQSFIP FGGNIKLSPC RVASVVYSLY LYGEVQENFS  300
ILGRVVDVSF SSVKFSYRTD PHSSPGHSQD YHFHGILSLS LLVPTEQSPV EFFEIVYCPQ  360
RAHLTSKDQR SPGTNKQKQY GLSPCLDSAV VQSSSNERQM LLEAFEDDAI YSHESQEVVA  420
ESQTNIQKKR KKSSTMWTAA DMISLEDLQQ NYGKKREEAA ESLQVSVSTF KRICRKFGID  480
RWPTAKRNKD KCLFSARKCD APLIAKVRTS QLLQNGMPCE DRETTCISRP KRKGKEKEAA  540
DNIEAINHFE EQPSEIQNRT PKRQAVDCAT KDSSCLNSIT GYVVDDMVST RMGVQAYLEA  600
ISIEQLNSIS CNENTSQNTK LLFDNLIALP LKDLINPEKE IYMKETLCIL AENLSFFSVE  660
QAKQIVELKF DFSTLVHSWR EYSQSQVCSQ KFFEDLERNR TLLATSAKDE ESLKVRYDEL  720
QSKKKELMAQ FEVVQKEQEG IAEQRREKTE QKKHLVSLAK EKASRTKEKQ LVMTIASAKL  780
NNLVDQWAAI QSLFM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	427	431	KKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009618486.1	0.0	PREDICTED: uncharacterized protein LOC104110657
TrEMBL	A0A1S3YG55	0.0	A0A1S3YG55_TOBAC; uncharacterized protein LOC107775968
STRING	XP_009618484.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15528	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	3e-11	Nin-like family protein