PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009618495.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 217aa    MW: 25252.7 Da    PI: 9.9028
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009618495.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.16.3e-251059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n   rqvtfskR+ g++KKA+EL +LCda+v v ifsstg+lyeyss
  XP_009618495.1 10 RIDNPASRQVTFSKRKSGLIKKAKELAILCDAQVGVTIFSSTGRLYEYSS 59
                    8***********************************************96 PP
2K-box70.26.4e-24811691098
           K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      ++ a+ +++e+++L++++e Lq++ R+l+Ge+L+ + + +L+ Le+qLe  l++iR+kK+++l+++ieel +k   +++en +L+kk+
  XP_009618495.1  81 PSSAAKLWRTEAERLRQQMEDLQENYRRLKGEELSGMRISDLHALENQLEMRLNNIRTKKEKMLTDEIEELNQKRALIHHENIELSKKV 169
                     5667889********************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.45161IPR002100Transcription factor, MADS-box
SMARTSM004329.8E-35160IPR002100Transcription factor, MADS-box
CDDcd002659.06E-37277No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-30385IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-26323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-263859IPR002100Transcription factor, MADS-box
PfamPF014862.6E-2283169IPR002487Transcription factor, K-box
PROSITE profilePS5129713.08385175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MARGKIAIRR IDNPASRQVT FSKRKSGLIK KAKELAILCD AQVGVTIFSS TGRLYEYSSS  60
SMKSIFDRYN EEKEHHQLLT PSSAAKLWRT EAERLRQQME DLQENYRRLK GEELSGMRIS  120
DLHALENQLE MRLNNIRTKK EKMLTDEIEE LNQKRALIHH ENIELSKKVT LVQHENRQLH  180
KKGYGAIDIR KEEGSFSGQA KYTKLDWGYN CNNSDQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-20182182MEF2C
5f28_B3e-20182182MEF2C
5f28_C3e-20182182MEF2C
5f28_D3e-20182182MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009608298.11e-139PREDICTED: MADS-box transcription factor 23-like isoform X1
RefseqXP_009608306.11e-139PREDICTED: MADS-box transcription factor 23-like isoform X1
RefseqXP_016491418.11e-139PREDICTED: MADS-box transcription factor 23-like isoform X1
RefseqXP_016491419.11e-139PREDICTED: MADS-box transcription factor 23-like isoform X1
SwissprotQ6EP492e-77MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1S4BRI81e-137A0A1S4BRI8_TOBAC; MADS-box transcription factor 23-like isoform X1
STRINGXP_009618485.11e-160(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.15e-79AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]