PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009618542.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 242aa    MW: 26096.6 Da    PI: 9.41
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009618542.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78e-202878256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+tae+Aa+a++ a+++++g+
  XP_009618542.1 28 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEDAARAYDTAAREFRGA 78
                    69*******.**********8...557*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.7E-392891IPR001471AP2/ERF domain
PfamPF008476.9E-132877IPR001471AP2/ERF domain
CDDcd000183.11E-332886No hitNo description
Gene3DG3DSA:3.30.730.107.2E-332885IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-222886IPR016177DNA-binding domain
PROSITE profilePS5103224.1052885IPR001471AP2/ERF domain
PRINTSPR003672.9E-112940IPR001471AP2/ERF domain
PRINTSPR003672.9E-115167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016604Cellular Componentnuclear body
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MSPKEKGTAA MATVTAAGKV NGVSKEMHYR GVRKRPWGRY AAEIRDPGKK SRVWLGTFDT  60
AEDAARAYDT AAREFRGAKA KTNFPIIEPE NVKLANRNCS PSQSSTVENS PPVMPENSPP  120
AVMLDTSPLD LSLGGSRSLF SNGVGRVLFQ NHQFHGSPVA GGIAGCITPV NHMYYLEALQ  180
RERVISSYKK SCRKTAEFIA GCGGGASGES DSSSVIDFMG HDLKPITRPI NLDLNLPPPE  240
NM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-232886261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00358DAPTransfer from AT3G15210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5737190.0AB573719.1 Nicotiana tabacum NtERF6b gene for ethylene response factor 6b, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009618542.10.0PREDICTED: ethylene-responsive transcription factor 4-like
RefseqXP_016448710.10.0PREDICTED: ethylene-responsive transcription factor 4-like
TrEMBLE7FKW31e-180E7FKW3_TOBAC; Ethylene response factor 6b
STRINGXP_009618542.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53170.14e-29ethylene response factor 8