PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009618561.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 134aa    MW: 15600 Da    PI: 8.7305
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009618561.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.11.3e-141149341
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                    i+++  r+ +f kR++ ++KK +ELS+LCd+++++ii+ 
  XP_009618561.1 11 IQDHKTRKSSFPKRKACLIKKISELSILCDIKACMIIYE 49
                    899999******************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.3E-15158IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.722152IPR002100Transcription factor, MADS-box
CDDcd002662.81E-18287No hitNo description
SuperFamilySSF554558.58E-19295IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-8323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-131152IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MGRSKINMEL IQDHKTRKSS FPKRKACLIK KISELSILCD IKACMIIYEG NNYEVISSQI  60
WPNDPNEVQE LINLYKNQPI EDKSKRAKSM SSFLENCIRS KSGMSDFEGT RSCLERELVI  120
NQARAQWQSM KYED
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009626363.13e-49PREDICTED: agamous-like MADS-box protein AGL82
RefseqXP_016476272.13e-49PREDICTED: agamous-like MADS-box protein AGL82
TrEMBLA0A1S4AHV28e-48A0A1S4AHV2_TOBAC; agamous-like MADS-box protein AGL82
STRINGXP_009618561.12e-94(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63421232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.21e-17AGAMOUS-like 87