PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009618779.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 170aa    MW: 19064.7 Da    PI: 10.021
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009618779.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.83.4e-07112154855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +  +RR++i ++ +eL +l+P       +K++ ae+ + A +YI+ Lq
  XP_009618779.1 112 AASQRRKKITEKTQELGKLIPGG-----QKMNTAEMFQAAYKYINFLQ 154
                     5679*****************86.....7*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.34E-7102157No hitNo description
PROSITE profilePS5088811.63104153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-10108158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-10108161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-6110159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-4115154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
ANPRFTSIVG TQSKRPSSSS SAISGHRRHS DSSPSLSCPK RQKFFQNNCC LEITNNYFNE  60
FVPNPPMLED LTSFSLPEFP SLPVYRSENT LEAKVSSVKK CNEKNLSAQS IAASQRRKKI  120
TEKTQELGKL IPGGQKMNTA EMFQAAYKYI NFLQSQVGIL QFMGSYQLLL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018631382.18e-57PREDICTED: transcription factor IND-like, partial
TrEMBLA0A1S4BWD82e-47A0A1S4BWD8_TOBAC; transcription factor bHLH52-like
STRINGXP_009618779.11e-122(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38562246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.12e-22bHLH family protein