PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009619384.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 447aa    MW: 51261.8 Da    PI: 6.5138
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009619384.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.58.5e-2476183186
        trihelix   1 rWtkqevlaLiearremeerlrrgk.....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.ts 73 
                     +Wt+++v++Li ++ +++++++++                      +kk++W++vs++m+ergf +sp+qC++k+++lnkryk+++++ +k+ ++
  XP_009619384.1  76 KWTDNMVRLLIMVVYYIGDEVGSELnnnnndttngkkkgggsvgvlQKKGKWKSVSRAMMERGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtAC 170
                     7**************777777754223456778888999999**************************************************559 PP

        trihelix  74 essstcpyfdqle 86 
                     +++++  +++ ++
  XP_009619384.1 171 RVVENQNLLETMD 183
                     *******999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.6E-2174209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MVILYNISHH QPPPPLHPIV SYGHQETENQ QQQSLRQGLP FGNKAKNQSL TFSDEDDNNS  60
VEDGKRSKTC PWQRMKWTDN MVRLLIMVVY YIGDEVGSEL NNNNNDTTNG KKKGGGSVGV  120
LQKKGKWKSV SRAMMERGFY VSPQQCEDKF NDLNKRYKRV NDILGKGTAC RVVENQNLLE  180
TMDHLSSKMK EEVKKLLNSK HLFFREMCAY HNSCGHNTST GGSGGSGNVQ LSTEVAVEAN  240
SQAQKRCLHS SENARIGVHL EEGPKMAKGK SVDDDQEDDE EDEDEDEEED DDDEVSGARG  300
GHDHHHNHSH EDDDDMDERS RKSQRKSGSL SPMVQQLSTE LANVIQDGGR SSVEKRQWLK  360
TRMVQLKEQH VSYLCQAFEL QKQRLKWEKF TSKKEREMEK EKLINERKKM ENERMVLLLR  420
QKELELLDFH QHQNHNNRNS DPSSVTG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755211e-113HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018631545.10.0PREDICTED: FERM domain-containing protein C isoform X2
TrEMBLA0A1S4DJE60.0A0A1S4DJE6_TOBAC; ESF1 homolog
STRINGXP_009619384.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67102231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.15e-73sequence-specific DNA binding transcription factors