PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009619412.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 223aa    MW: 25961.2 Da    PI: 8.8645
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009619412.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260110.99e-359104195
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     aCa+Ck++r+kC+++Cvlapyfpae++++f++vhk+FG+sn++k++k+l+e++ r++a++sl++eA +r++dPv G +g ++++ ++l+  k++ 
  XP_009619412.1   9 ACASCKHQRKKCTEKCVLAPYFPAEKSREFKAVHKVFGVSNITKIVKNLKEDHdRRKAVESLIWEAFCRQKDPVFGPYGEYKRIYEELKLYKSQY 103
                     7************************************************66555**********************************9999887 PP

          DUF260  95 a 95 
                     +
  XP_009619412.1 104 E 104
                     6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.2828110IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-339105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MQKTSGTAAC ASCKHQRKKC TEKCVLAPYF PAEKSREFKA VHKVFGVSNI TKIVKNLKED  60
HDRRKAVESL IWEAFCRQKD PVFGPYGEYK RIYEELKLYK SQYEQILQMP ISQGSNNNGM  120
AYETTAQGLI NGWNINKRNE NNLLYINENS TVESWSSYNN KNNPLHHHVQ NIEKLRTENN  180
NGSIVIVPQP QAYNEFNQQY FLAGQYNPID FKSRESMLWE DHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-22487588LOB family transfactor Ramosa2.1
5ly0_B6e-22487588LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619412.11e-168PREDICTED: LOB domain-containing protein 2
TrEMBLA0A1S4ARL91e-165A0A1S4ARL9_TOBAC; LOB domain-containing protein 2-like
STRINGXP_009619412.11e-167(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101771827
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.19e-44LOB domain-containing protein 2