PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009619423.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 248aa    MW: 28151.3 Da    PI: 7.1968
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009619423.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.2e-0595117123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C++C + F+++  L  H++ H
  XP_009619423.1  95 YECQYCFRNFPTSQALGGHQNAH 117
                     99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.95E-692122No hitNo description
PfamPF139121.1E-595119IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.32395122IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDKTEREAVD FMNVETFSQL IPFIRPPPPP VKEKPIRLFG KELEGGRNAT TTTDMSESID  60
SNPFHDEPEI ITANPVNYAY KESHIGNNEE SNKKYECQYC FRNFPTSQAL GGHQNAHKRE  120
RQNAKRAHLQ SALAHEANIY GIMNHHRLGE PAAPSTTRYS TWNNINNSTR SYGNHHVISP  180
YSQTPINRNP LAFWRIPPAV HQNFSSNLVF PNDDLKPFPT VKSPNCDSTF GYEPKGGVQD  240
HLSLDLHL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619423.10.0PREDICTED: zinc finger protein 8-like
TrEMBLA0A1S3X5B90.0A0A1S3X5B9_TOBAC; zinc finger protein 8-like
STRINGXP_009619423.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14731526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41940.11e-39zinc finger protein 8