PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009619569.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 249aa MW: 28162.6 Da PI: 8.3168

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009619569.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.3	1.8e-10	106	142	1	32
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC....... CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas.....k 32 +r++h ++Er+RR+++N+ + Lr+l+P+++ XP_009619569.1 106 QRMTHIAVERNRRKQMNEYLTVLRSLMPSSYvqrysT 142 79***************************64355440 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.47E-9	96	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.22E-7	104	139	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.2E-9	105	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.521	105	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.0E-8	106	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MALETVVYPQ EQFGYFYNKE FYASTNSFHH SLSNWESSSC NSMMQNQVKE YNWDISNFSA 60 AACNNVVENQ LFLEGSLTKA DTSGGRRKRR RTARGSNKNR EELENQRMTH IAVERNRRKQ 120 MNEYLTVLRS LMPSSYVQRY STTHSNHANS SPAAATNSSE SAAENRSVMA DIEVNLVESH 180 ANLKILSKRR PKQLLQIVAG LQCLSLTILH LNVTTVDQMV LYTLSAKVEE GCQLTTVEEI 240 AQAVNQLLA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	90	RKRRR
2	86	91	RKRRRT
3	106	117	RMTHIAVERNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009619569.1	0.0	PREDICTED: transcription factor bHLH96-like isoform X2
Swissprot	Q9C7T4	3e-56	BH096_ARATH; Transcription factor bHLH96
TrEMBL	A0A1S3YS14	1e-156	A0A1S3YS14_TOBAC; transcription factor bHLH96-like
STRING	XP_009619568.1	1e-159	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	9e-32	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]